Research

Machine learning research and publications.

Machine Learning, Geometry, Dynamics, Controlled Transport for Biology & Chemistry.

Selected papers

Methods and applied research

Selected papers with short notes on the method and results.

2026

Neural Point-Forms

Bruno Trentini, Jacob Hume, Vincenzo Antonio Isoldi, Philipp Misof, Ekaterina S. Ivshina and Kelly Maggs.

arXiv:2605.15524 · cs.LG

2026

Entropy Across the Bridge: Conditional-Marginal Discretization for Flow and Schrödinger Samplers

Bruno Trentini, Dejan Stancevic, Michael M. Bronstein, Alexander Tong and Luca Ambrogioni.

arXiv:2605.16126 · cs.LG

2025

Improving Inverse Folding for Peptide Design with Diversity-Regularized Direct Preference Optimization

Ryan Park, Darren J. Hsu, C. Brian Roland, Maria Korshunova, Chen Tessler, Shie Mannor, Olivia Viessmann and Bruno Trentini.

Spotlight · ICML 2025 2nd Workshop on Generative AI and Biology

2025

Advancing Protein Ensemble Predictions Across the Order-Disorder Continuum

Michele Invernizzi, Sandro Bottaro, Julian O. Streit, Bruno Trentini and collaborators.

bioRxiv

2024

BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery

Peter St John, Dejun Lin, Polina Binder, Malcolm Greaves, Bruno Trentini and collaborators.

arXiv:2411.10548

2013

Sistemas Inteligentes de Transporte Aplicados ao Controle de Tráfego

Bruno Trentini and Walter Godoy Jr.

Research project · Federal University of Technology – Paraná

Scientific programmes

Workshops and research communities

Workshops and events I helped organise.

2026

SimBioChem · 2nd Edition: Machine Learning for Simulations in Biology and Chemistry

Second edition of the SimBioChem workshop.

Accepted at NeurIPS 2026

2025

Machine Learning for Simulations in Biology and Chemistry

Bruno Trentini, Constance Ferragu, Hassan Sirelkhatim, Kristine Deibler, Marwin Segler, Michael M. Bronstein and collaborators.

Accepted at EurIPS 2025

2025

AI for Nucleic Acids Workshop

Ivona Martinović, Lovro Vrček, Chaitanya K. Joshi, Bruno Trentini and collaborators.

Accepted at ICLR 2025

2024

ML for Life and Material Science: From Theory to Industry Applications

Aviv Regev, Andrea Volkamer, Bruno Trentini, Cecilia Clementi, Charlotte Deane and collaborators.

The workshop drew standing queues outside the room, secured €40,000 in sponsorship, accepted 100+ papers and involved 140+ reviewers.

Accepted at ICML 2024

2022

NVIDIA Healthcare & Life Sciences Developer Summit

Organiser.

EMEA HCLS Developer Summit · NVIDIA